PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3854
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 230aa    MW: 26807.3 Da    PI: 4.9439
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3854genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.12.2e-13159229271
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkr 71 
                  Wt++e+ +L++a  +   + +r++l+   W+ev++k+++  + er+ +qC+++++ l+k+ykk+k++ +++
  Gh_A05G3854 159 WTEHETFVLLDAWGDCFLQRGRKSLRSEEWQEVAEKVSKVSMiERTDTQCRNRLDTLKKKYKKEKAMLQRH 229
                  *************************************777666***********************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-18158226No hitNo description
Gene3DG3DSA:1.10.10.606.8E-5159223IPR009057Homeodomain-like
PROSITE profilePS500906.156159216IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDDIEDDARY PPNQYGVSHQ RCYGSLSRRK LPVRNLPYSR SMGNQDVNDD EVEDEEDFRR  60
EAKNREQNNV AWYIGKNIDN EDDDELDDGE EEDDDDGSDK PKGYNENSND VDLERHPKKR  120
KLKNLLSSYE FAPRVPAPAA AASSMPKPSH GGRNSLTDWT EHETFVLLDA WGDCFLQRGR  180
KSLRSEEWQE VAEKVSKVSM IERTDTQCRN RLDTLKKKYK KEKAMLQRHH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453753.17e-79PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D2QF631e-112A0A0D2QF63_G
STRINGVIT_09s0002g04700.t016e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2818033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-18Trihelix family protein